Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH11468.1 | SDH11493.1 | SAMN04487901_11714 | SAMN04487901_11715 | Hypothetical protein. | Cell division protein FtsI (penicillin-binding protein 3). | 0.886 |
SDH11468.1 | SDH11716.1 | SAMN04487901_11714 | SAMN04487901_11719 | Hypothetical protein. | Cell division protein FtsW; Belongs to the SEDS family. | 0.795 |
SDH11468.1 | ftsA | SAMN04487901_11714 | SAMN04487901_11723 | Hypothetical protein. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.741 |
SDH11468.1 | mraY | SAMN04487901_11714 | SAMN04487901_11717 | Hypothetical protein. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.752 |
SDH11468.1 | mraZ | SAMN04487901_11714 | SAMN04487901_11712 | Hypothetical protein. | MraZ protein; Belongs to the MraZ family. | 0.847 |
SDH11468.1 | murC | SAMN04487901_11714 | SAMN04487901_11721 | Hypothetical protein. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.743 |
SDH11468.1 | murD | SAMN04487901_11714 | SAMN04487901_11718 | Hypothetical protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.752 |
SDH11468.1 | murE | SAMN04487901_11714 | SAMN04487901_11716 | Hypothetical protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.820 |
SDH11468.1 | murG | SAMN04487901_11714 | SAMN04487901_11720 | Hypothetical protein. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.750 |
SDH11468.1 | rsmH | SAMN04487901_11714 | SAMN04487901_11713 | Hypothetical protein. | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.847 |
SDH11493.1 | SDH11468.1 | SAMN04487901_11715 | SAMN04487901_11714 | Cell division protein FtsI (penicillin-binding protein 3). | Hypothetical protein. | 0.886 |
SDH11493.1 | SDH11716.1 | SAMN04487901_11715 | SAMN04487901_11719 | Cell division protein FtsI (penicillin-binding protein 3). | Cell division protein FtsW; Belongs to the SEDS family. | 0.984 |
SDH11493.1 | ftsA | SAMN04487901_11715 | SAMN04487901_11723 | Cell division protein FtsI (penicillin-binding protein 3). | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.912 |
SDH11493.1 | mraY | SAMN04487901_11715 | SAMN04487901_11717 | Cell division protein FtsI (penicillin-binding protein 3). | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.904 |
SDH11493.1 | mraZ | SAMN04487901_11715 | SAMN04487901_11712 | Cell division protein FtsI (penicillin-binding protein 3). | MraZ protein; Belongs to the MraZ family. | 0.853 |
SDH11493.1 | murC | SAMN04487901_11715 | SAMN04487901_11721 | Cell division protein FtsI (penicillin-binding protein 3). | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.945 |
SDH11493.1 | murD | SAMN04487901_11715 | SAMN04487901_11718 | Cell division protein FtsI (penicillin-binding protein 3). | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.941 |
SDH11493.1 | murE | SAMN04487901_11715 | SAMN04487901_11716 | Cell division protein FtsI (penicillin-binding protein 3). | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.967 |
SDH11493.1 | murG | SAMN04487901_11715 | SAMN04487901_11720 | Cell division protein FtsI (penicillin-binding protein 3). | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.951 |
SDH11493.1 | rsmH | SAMN04487901_11715 | SAMN04487901_11713 | Cell division protein FtsI (penicillin-binding protein 3). | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.887 |
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