Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH12839.1 | SDH12867.1 | SAMN04487901_11758 | SAMN04487901_11759 | PASTA domain-containing protein. | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.850 |
SDH12839.1 | SDH12912.1 | SAMN04487901_11758 | SAMN04487901_11761 | PASTA domain-containing protein. | Hypothetical protein. | 0.843 |
SDH12839.1 | SDH12943.1 | SAMN04487901_11758 | SAMN04487901_11762 | PASTA domain-containing protein. | NigD-like protein. | 0.741 |
SDH12839.1 | ddl | SAMN04487901_11758 | SAMN04487901_11760 | PASTA domain-containing protein. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.894 |
SDH12839.1 | rpmH | SAMN04487901_11758 | SAMN04487901_11757 | PASTA domain-containing protein. | Large subunit ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.666 |
SDH12867.1 | SDH12839.1 | SAMN04487901_11759 | SAMN04487901_11758 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | PASTA domain-containing protein. | 0.850 |
SDH12867.1 | SDH12912.1 | SAMN04487901_11759 | SAMN04487901_11761 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Hypothetical protein. | 0.843 |
SDH12867.1 | SDH12943.1 | SAMN04487901_11759 | SAMN04487901_11762 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | NigD-like protein. | 0.741 |
SDH12867.1 | ddl | SAMN04487901_11759 | SAMN04487901_11760 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.843 |
SDH12867.1 | mnmE | SAMN04487901_11759 | SAMN04487901_12020 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.729 |
SDH12867.1 | obg | SAMN04487901_11759 | SAMN04487901_101204 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.687 |
SDH12867.1 | rplQ | SAMN04487901_11759 | SAMN04487901_11936 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Large subunit ribosomal protein L17. | 0.659 |
SDH12867.1 | rplU | SAMN04487901_11759 | SAMN04487901_11228 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.718 |
SDH12867.1 | rpmH | SAMN04487901_11759 | SAMN04487901_11757 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Large subunit ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.753 |
SDH12867.1 | rsfS | SAMN04487901_11759 | SAMN04487901_10580 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.710 |
SDH12912.1 | SDH12839.1 | SAMN04487901_11761 | SAMN04487901_11758 | Hypothetical protein. | PASTA domain-containing protein. | 0.843 |
SDH12912.1 | SDH12867.1 | SAMN04487901_11761 | SAMN04487901_11759 | Hypothetical protein. | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.843 |
SDH12912.1 | SDH12943.1 | SAMN04487901_11761 | SAMN04487901_11762 | Hypothetical protein. | NigD-like protein. | 0.744 |
SDH12912.1 | ddl | SAMN04487901_11761 | SAMN04487901_11760 | Hypothetical protein. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.847 |
SDH12912.1 | rpmH | SAMN04487901_11761 | SAMN04487901_11757 | Hypothetical protein. | Large subunit ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.610 |
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