STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFF89843.1ABC transporter, ATP-binding protein. (271 aa)    
Predicted Functional Partners:
EFF89844.1
ABC transporter integral membrane protein.
 
  0.975
EFF91466.1
ABC lipoprotein transporter, permease component.
 
  0.975
EFF89424.1
ABC transporter integral membrane protein; Truncated CDS.
 
  0.922
EFF93601.1
ABC transporter integral membrane protein.
 
  0.912
EFF92778.1
Integral membrane protein.
 
 0.885
EFF94320.1
ABC transporter, permease.
 
 0.869
EFF91447.1
ABC transporter integral membrane protein.
 
 
 0.858
EFF92499.1
Membrane protein.
   
 
 0.849
EFF91081.1
Membrane protein; Unextendable partial coding region.
  
 0.828
EFF92811.1
Translation initiation factor IF-2.
 
  0.818
Your Current Organism:
Streptomyces sp. e14
NCBI taxonomy Id: 645465
Other names: S. sp. e14
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