STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFF90238.1Polysaccharide deacetylase. (267 aa)    
Predicted Functional Partners:
EFF90237.1
Succinoglycan biosynthesis protein.
 
 
  0.917
EFF90239.1
Conserved hypothetical protein.
 
   
 0.885
EFF90236.1
Histidinol-phosphate phosphatase.
 
 
  0.868
EFF90235.1
Conserved hypothetical protein.
 
     0.600
EFF90240.1
Beta-xylosidase; Unextendable partial coding region.
  
  
  0.486
EFF91210.1
Glycosyl transferase.
 
 
  0.479
EFF91646.1
Endoglucanase E1.
    
 0.477
EFF88981.1
Glycosyl hydrolase.
    
 0.477
EFF90234.1
Conserved hypothetical protein.
       0.474
EFF93700.1
Chitinase; Truncated CDS.
    
 0.471
Your Current Organism:
Streptomyces sp. e14
NCBI taxonomy Id: 645465
Other names: S. sp. e14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.