Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFF91313.1 | EFF92007.1 | SSTG_01632 | SSTG_02326 | Membrane protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.726 |
EFF91313.1 | EFF92348.1 | SSTG_01632 | SSTG_02667 | Membrane protein. | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.668 |
EFF92007.1 | EFF91313.1 | SSTG_02326 | SSTG_01632 | RNA polymerase sigma-70 factor, ECF subfamily. | Membrane protein. | 0.726 |
EFF92007.1 | EFF92348.1 | SSTG_02326 | SSTG_02667 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.787 |
EFF92007.1 | EFF92376.1 | SSTG_02326 | SSTG_02695 | RNA polymerase sigma-70 factor, ECF subfamily. | Conserved hypothetical protein. | 0.639 |
EFF92007.1 | EFF93000.1 | SSTG_02326 | SSTG_03319 | RNA polymerase sigma-70 factor, ECF subfamily. | Conserved hypothetical protein. | 0.726 |
EFF92007.1 | rpoA | SSTG_02326 | SSTG_02921 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.683 |
EFF92007.1 | rpoB | SSTG_02326 | SSTG_02867 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.760 |
EFF92007.1 | rpoC | SSTG_02326 | SSTG_02868 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.775 |
EFF92007.1 | rpoZ | SSTG_02326 | SSTG_00325 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.682 |
EFF92346.1 | EFF92347.1 | SSTG_02665 | SSTG_02666 | DNA-binding response regulator. | Lipoprotein CseA. | 0.894 |
EFF92346.1 | EFF92348.1 | SSTG_02665 | SSTG_02667 | DNA-binding response regulator. | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.747 |
EFF92347.1 | EFF92346.1 | SSTG_02666 | SSTG_02665 | Lipoprotein CseA. | DNA-binding response regulator. | 0.894 |
EFF92347.1 | EFF92348.1 | SSTG_02666 | SSTG_02667 | Lipoprotein CseA. | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.858 |
EFF92348.1 | EFF91313.1 | SSTG_02667 | SSTG_01632 | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | Membrane protein. | 0.668 |
EFF92348.1 | EFF92007.1 | SSTG_02667 | SSTG_02326 | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.787 |
EFF92348.1 | EFF92346.1 | SSTG_02667 | SSTG_02665 | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-binding response regulator. | 0.747 |
EFF92348.1 | EFF92347.1 | SSTG_02667 | SSTG_02666 | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | Lipoprotein CseA. | 0.858 |
EFF92348.1 | EFF92376.1 | SSTG_02667 | SSTG_02695 | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved hypothetical protein. | 0.855 |
EFF92348.1 | EFF93000.1 | SSTG_02667 | SSTG_03319 | RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved hypothetical protein. | 0.771 |
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