STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kanEAlpha-D-kanosaminyltransferase. (408 aa)    
Predicted Functional Partners:
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
    0.855
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.844
mshA_1
D-inositol 3-phosphate glycosyltransferase.
 
     0.809
spsA
Spore coat polysaccharide biosynthesis protein SpsA.
  
 
 0.801
ANU06917.1
Hypothetical protein.
       0.596
wecA
UDP-N-acetylgalactosamine-undecaprenyl-phosphate N-acetylgalactosaminephosphotransferase.
  
 0.590
lptD_1
LPS-assembly protein LptD.
       0.580
ANU06919.1
Hypothetical protein.
       0.576
rnd_1
Ribonuclease D.
       0.576
pimB
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase.
 
     0.551
Your Current Organism:
Altererythrobacter namhicola
NCBI taxonomy Id: 645517
Other names: A. namhicola, Altererythrobacter namhicola Park et al. 2011, JCM 16345, KCTC 22736, alpha proteobacterium KYW48, strain KYW48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.