Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ANU07269.1 | rplI | A6F65_00959 | A6F65_01474 | Hypothetical protein. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.718 |
ANU07269.1 | rplO | A6F65_00959 | A6F65_01328 | Hypothetical protein. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.711 |
ANU07269.1 | rplY | A6F65_00959 | A6F65_01732 | Hypothetical protein. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.715 |
ANU07269.1 | rpmA | A6F65_00959 | A6F65_01120 | Hypothetical protein. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.721 |
ANU07269.1 | rpmC | A6F65_00959 | A6F65_01316 | Hypothetical protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.712 |
ANU07269.1 | rpmH | A6F65_00959 | A6F65_00021 | Hypothetical protein. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.714 |
ANU07269.1 | rpsD | A6F65_00959 | A6F65_01613 | Hypothetical protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.712 |
ANU07269.1 | rpsE | A6F65_00959 | A6F65_01325 | Hypothetical protein. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.711 |
ANU07269.1 | rpsI | A6F65_00959 | A6F65_00456 | Hypothetical protein. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.718 |
ANU07269.1 | rpsU | A6F65_00959 | A6F65_02340 | Hypothetical protein. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.726 |
rplI | ANU07269.1 | A6F65_01474 | A6F65_00959 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Hypothetical protein. | 0.718 |
rplI | rplO | A6F65_01474 | A6F65_01328 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.994 |
rplI | rplY | A6F65_01474 | A6F65_01732 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.990 |
rplI | rpmA | A6F65_01474 | A6F65_01120 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.992 |
rplI | rpmC | A6F65_01474 | A6F65_01316 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.984 |
rplI | rpmH | A6F65_01474 | A6F65_00021 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.932 |
rplI | rpsD | A6F65_01474 | A6F65_01613 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.995 |
rplI | rpsE | A6F65_01474 | A6F65_01325 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.990 |
rplI | rpsI | A6F65_01474 | A6F65_00456 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.994 |
rplI | rpsU | A6F65_01474 | A6F65_02340 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.947 |
page 1 of 6