A0A1Y2G5S1 protein (Lobosporangium transversale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2G5S1

CAP domain-containing protein. (170 aa)

Predicted Functional Partners:

A0A1Y2GCK8

0.592

A0A1Y2H298

0.556

A0A1Y2G7R7

0.538

A0A1Y2GNK9

0.475

A0A1Y2H353

0.475

A0A1Y2G677

0.403

A0A1Y2GG17

0.403

A0A1Y2GM57

0.403

A0A1Y2GWZ2

0.403

A0A1Y2H3V8

0.403

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G5S1	A0A1Y2G677	CAP domain-containing protein.	Beta-hexosaminidase.	0.403
A0A1Y2G5S1	A0A1Y2G7R7	CAP domain-containing protein.	FAD dependent oxidoreductase.	0.538
A0A1Y2G5S1	A0A1Y2GCK8	CAP domain-containing protein.	Bifunctional purine ADE1.	0.592
A0A1Y2G5S1	A0A1Y2GG17	CAP domain-containing protein.	Beta-hexosaminidase.	0.403
A0A1Y2G5S1	A0A1Y2GM57	CAP domain-containing protein.	Glyco_hydro_20 domain-containing protein.	0.403
A0A1Y2G5S1	A0A1Y2GNK9	CAP domain-containing protein.	Malic enzyme.	0.475
A0A1Y2G5S1	A0A1Y2GWZ2	CAP domain-containing protein.	Glycoside hydrolase superfamily.	0.403
A0A1Y2G5S1	A0A1Y2H298	CAP domain-containing protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.556
A0A1Y2G5S1	A0A1Y2H353	CAP domain-containing protein.	Malic enzyme.	0.475
A0A1Y2G5S1	A0A1Y2H3V8	CAP domain-containing protein.	Beta-hexosaminidase.	0.403
A0A1Y2G677	A0A1Y2G5S1	Beta-hexosaminidase.	CAP domain-containing protein.	0.403
A0A1Y2G7R7	A0A1Y2G5S1	FAD dependent oxidoreductase.	CAP domain-containing protein.	0.538
A0A1Y2G7R7	A0A1Y2GNK9	FAD dependent oxidoreductase.	Malic enzyme.	0.821
A0A1Y2G7R7	A0A1Y2H298	FAD dependent oxidoreductase.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.869
A0A1Y2G7R7	A0A1Y2H353	FAD dependent oxidoreductase.	Malic enzyme.	0.821
A0A1Y2GCK8	A0A1Y2G5S1	Bifunctional purine ADE1.	CAP domain-containing protein.	0.592
A0A1Y2GG17	A0A1Y2G5S1	Beta-hexosaminidase.	CAP domain-containing protein.	0.403
A0A1Y2GM57	A0A1Y2G5S1	Glyco_hydro_20 domain-containing protein.	CAP domain-containing protein.	0.403
A0A1Y2GNK9	A0A1Y2G5S1	Malic enzyme.	CAP domain-containing protein.	0.475
A0A1Y2GNK9	A0A1Y2G7R7	Malic enzyme.	FAD dependent oxidoreductase.	0.821