STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2G917Mre11 DNA-binding presumed domain-domain-containing protein; Belongs to the MRE11/RAD32 family. (556 aa)    
Predicted Functional Partners:
A0A1Y2G4X8
P-loop containing nucleoside triphosphate hydrolase protein.
  
 0.999
A0A1Y2GEN1
FHA domain-containing protein.
    
 0.999
A0A1Y2GK20
Uncharacterized protein.
   
 0.998
A0A1Y2G5V5
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.997
A0A1Y2GHP1
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.997
A0A1Y2GYJ4
3'-5' exonuclease domain-containing protein.
   
 0.997
A0A1Y2GTG5
SPOC like C-terminal domain-containing protein.
   
 0.982
A0A1Y2GW08
PIN domain-like protein.
   
 0.982
A0A1Y2GAC3
JmjC domain, hydroxylase-domain-containing protein.
    
  0.979
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.976
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.