STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GCF3Ricin B-type lectin domain-containing protein. (500 aa)    
Predicted Functional Partners:
A0A1Y2GUM1
Uncharacterized protein.
   
 0.903
A0A1Y2G8R5
DNA polymerase alpha/epsilon subunit B-domain-containing protein.
    
 0.870
A0A1Y2G7P4
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.860
A0A1Y2GJU8
Uncharacterized protein.
    
 0.858
A0A1Y2GTQ8
DNA polymerase.
   
 0.847
A0A1Y2GIZ9
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.843
A0A1Y2G727
Sm domain-containing protein.
    
  0.839
A0A1Y2GNG2
Small nuclear ribonucleoprotein G.
    
  0.834
A0A1Y2GPN6
ERCC4 domain-containing protein.
    
 0.827
A0A1Y2GK04
Uncharacterized protein.
    
 0.800
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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