A0A1Y2GDZ0 protein (Lobosporangium transversale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2GDZ0

Chorismate mutase. (282 aa)

Predicted Functional Partners:

A0A1Y2GQ72

0.973

A0A1Y2GZH6

0.945

A0A1Y2GDM6

0.919

A0A1Y2GE11

0.913

A0A1Y2GT62

0.899

A0A1Y2G6D1

0.892

A0A1Y2GGM4

0.887

A0A1Y2GEE5

0.876

A0A1Y2GR48

0.869

A0A1Y2G946

0.866

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G6D1	A0A1Y2G946	P-protein.	Chorismate binding enzyme-domain-containing protein.	0.722
A0A1Y2G6D1	A0A1Y2GDM6	P-protein.	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	0.870
A0A1Y2G6D1	A0A1Y2GDZ0	P-protein.	Chorismate mutase.	0.892
A0A1Y2G6D1	A0A1Y2GE11	P-protein.	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.	0.853
A0A1Y2G6D1	A0A1Y2GGM4	P-protein.	Anthranilate phosphoribosyltransferase.	0.867
A0A1Y2G6D1	A0A1Y2GQ72	P-protein.	Chorismate synthase.	0.857
A0A1Y2G6D1	A0A1Y2GR48	P-protein.	Anthranilate synthase component I.	0.722
A0A1Y2G6D1	A0A1Y2GT62	P-protein.	Histidinol-phosphate aminotransferase.	0.860
A0A1Y2G6D1	A0A1Y2GZH6	P-protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.940
A0A1Y2G946	A0A1Y2G6D1	Chorismate binding enzyme-domain-containing protein.	P-protein.	0.722
A0A1Y2G946	A0A1Y2GDM6	Chorismate binding enzyme-domain-containing protein.	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	0.857
A0A1Y2G946	A0A1Y2GDZ0	Chorismate binding enzyme-domain-containing protein.	Chorismate mutase.	0.866
A0A1Y2G946	A0A1Y2GE11	Chorismate binding enzyme-domain-containing protein.	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.	0.863
A0A1Y2G946	A0A1Y2GGM4	Chorismate binding enzyme-domain-containing protein.	Anthranilate phosphoribosyltransferase.	0.998
A0A1Y2G946	A0A1Y2GQ72	Chorismate binding enzyme-domain-containing protein.	Chorismate synthase.	0.899
A0A1Y2G946	A0A1Y2GR48	Chorismate binding enzyme-domain-containing protein.	Anthranilate synthase component I.	0.798
A0A1Y2G946	A0A1Y2GT62	Chorismate binding enzyme-domain-containing protein.	Histidinol-phosphate aminotransferase.	0.873
A0A1Y2G946	A0A1Y2GZH6	Chorismate binding enzyme-domain-containing protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.999
A0A1Y2GDM6	A0A1Y2G6D1	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	P-protein.	0.870
A0A1Y2GDM6	A0A1Y2G946	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Chorismate binding enzyme-domain-containing protein.	0.857