A0A1Y2GHI5 protein (Lobosporangium transversale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2GHI5

P-loop containing nucleoside triphosphate hydrolase protein. (206 aa)

Predicted Functional Partners:

A0A1Y2G8Y0

0.732

A0A1Y2GRJ4

0.705

A0A1Y2GUM1

0.638

A0A1Y2GUK5

0.633

A0A1Y2H0B4

0.630

A0A1Y2GJA3

0.608

A0A1Y2GRX8

0.607

A0A1Y2GR84

0.598

A0A1Y2GUY1

0.598

A0A1Y2H4X4

0.595

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G8Y0	A0A1Y2GHI5	Acetyl-CoA carboxylase.	P-loop containing nucleoside triphosphate hydrolase protein.	0.732
A0A1Y2G8Y0	A0A1Y2H4X4	Acetyl-CoA carboxylase.	Metalloenzyme, LuxS/M16 peptidase-like protein.	0.641
A0A1Y2GHI5	A0A1Y2G8Y0	P-loop containing nucleoside triphosphate hydrolase protein.	Acetyl-CoA carboxylase.	0.732
A0A1Y2GHI5	A0A1Y2GJA3	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.608
A0A1Y2GHI5	A0A1Y2GR84	P-loop containing nucleoside triphosphate hydrolase protein.	Transcription initiation factor TFIID component TAF4 family-domain-containing protein.	0.598
A0A1Y2GHI5	A0A1Y2GRJ4	P-loop containing nucleoside triphosphate hydrolase protein.	ANTH domain-domain-containing protein.	0.705
A0A1Y2GHI5	A0A1Y2GRX8	P-loop containing nucleoside triphosphate hydrolase protein.	Kinase-like domain-containing protein.	0.607
A0A1Y2GHI5	A0A1Y2GUK5	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.633
A0A1Y2GHI5	A0A1Y2GUM1	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.638
A0A1Y2GHI5	A0A1Y2GUY1	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the AAA ATPase family.	0.598
A0A1Y2GHI5	A0A1Y2H0B4	P-loop containing nucleoside triphosphate hydrolase protein.	Putative intracellular protein transport-related protein; Belongs to the adaptor complexes medium subunit family.	0.630
A0A1Y2GHI5	A0A1Y2H4X4	P-loop containing nucleoside triphosphate hydrolase protein.	Metalloenzyme, LuxS/M16 peptidase-like protein.	0.595
A0A1Y2GJA3	A0A1Y2GHI5	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.608
A0A1Y2GR84	A0A1Y2GHI5	Transcription initiation factor TFIID component TAF4 family-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.598
A0A1Y2GRJ4	A0A1Y2GHI5	ANTH domain-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.705
A0A1Y2GRJ4	A0A1Y2H0B4	ANTH domain-domain-containing protein.	Putative intracellular protein transport-related protein; Belongs to the adaptor complexes medium subunit family.	0.769
A0A1Y2GRX8	A0A1Y2GHI5	Kinase-like domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.607
A0A1Y2GRX8	A0A1Y2GUM1	Kinase-like domain-containing protein.	Uncharacterized protein.	0.997
A0A1Y2GRX8	A0A1Y2GUY1	Kinase-like domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the AAA ATPase family.	0.737
A0A1Y2GRX8	A0A1Y2H0B4	Kinase-like domain-containing protein.	Putative intracellular protein transport-related protein; Belongs to the adaptor complexes medium subunit family.	0.864