STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GHU9P-loop containing nucleoside triphosphate hydrolase protein. (1406 aa)    
Predicted Functional Partners:
A0A1Y2GT95
TAP42-like protein.
    
 0.790
A0A1Y2GV12
Serine/threonine-protein phosphatase.
   
 0.658
A0A1Y2GC10
Serine/threonine-protein phosphatase.
    
 0.637
A0A1Y2GG59
Metallo-dependent phosphatase-like protein.
    
 0.637
A0A1Y2GX94
Metallo-dependent phosphatase-like protein.
    
 0.637
A0A1Y2GXT7
Serine/threonine-protein phosphatase.
    
 0.637
A0A1Y2GBK5
COX15/CtaA family.
    
 0.609
A0A1Y2GE11
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
     
 0.597
A0A1Y2GKA1
Succinate-semialdehyde dehydrogenase.
     
 0.597
A0A1Y2GYI3
ATP synthase subunit gamma.
   
   0.578
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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