STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
A0A1Y2GHV8Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family. (1384 aa)    
Predicted Functional Partners:
A0A1Y2H355
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.997
A0A1Y2GN75
PAXNEB protein-domain-containing protein.
   
 0.995
A0A1Y2H392
WD40-repeat-containing domain protein.
   
 0.969
A0A1Y2GVY7
Elongator complex protein 5.
   
 0.952
A0A1Y2GA28
RlpA-like double-psi beta-barrel-protein domain-containing protein-containing protein.
   
 0.928
A0A1Y2GUS2
Chromatin associated protein KTI12.
    
 
 0.867
A0A1Y2G8A9
DPH-type MB domain-containing protein.
   
 
 0.850
A0A1Y2G7U9
NUC153 domain-containing protein.
   
    0.848
A0A1Y2GRQ8
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.829
A0A1Y2GZU7
Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.788
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.