STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GJY7Ribonuclease H-like domain-containing protein. (661 aa)    
Predicted Functional Partners:
A0A1Y2GB42
Uncharacterized protein.
    
 0.684
A0A1Y2GQR4
Dcp2, box A domain-domain-containing protein.
     
 0.682
A0A1Y2GTX4
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.659
A0A1Y2H4P6
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.659
A0A1Y2GN23
Ribosomal protein S5 domain 2-type protein.
     
 0.651
A0A1Y2G9Y1
3' exoribonuclease family, domain 1-domain-containing protein.
     
 0.631
A0A1Y2GI17
Exosome component 2.
     
 0.630
A0A1Y2GZR3
Uncharacterized protein.
     
 0.630
A0A1Y2GCY3
Putative exosome complex exonuclease-like protein RRP41.
     
 0.629
A0A1Y2GAW4
RNB domain-containing protein.
     
 0.628
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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