STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GKN9Uncharacterized protein. (661 aa)    
Predicted Functional Partners:
A0A1Y2GDB7
CCR4-Not complex component, Not1-domain-containing protein.
    
 0.961
A0A1Y2H2Q1
Not1 N-terminal domain, CCR4-Not complex component-domain-containing protein.
    
 0.926
A0A1Y2H053
Ribonuclease H-like domain-containing protein.
    
 0.922
A0A1Y2GBU1
Cell differentiation family, Rcd1-like-domain-containing protein.
    
 0.908
A0A1Y2H025
Cell differentiation family, Rcd1-like-domain-containing protein.
    
 0.908
A0A1Y2H266
NOT2_3_5 domain-containing protein.
    
 0.898
A0A1Y2GEG0
CUE domain-containing protein.
    
 0.848
A0A1Y2H416
Uncharacterized protein.
    
 0.848
A0A1Y2GW72
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
    
 0.846
A0A1Y2GIE2
High mobility group box domain-containing protein.
    
 0.779
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.