STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GNS9FYVE zinc finger-domain-containing protein. (686 aa)    
Predicted Functional Partners:
A0A1Y2GHL6
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.992
A0A1Y2GX06
Ras-related protein rab-4B-like protein.
    
 0.970
A0A1Y2GL70
Alginate lyase-domain-containing protein.
   
 0.924
A0A1Y2GQL3
Alginate lyase-domain-containing protein.
   
 0.924
A0A1Y2H0H4
Ras-related protein rab-5B-like protein.
   
 0.924
A0A1Y2H3P5
Ras-domain-containing protein.
   
 0.924
A0A1Y2GIM5
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.922
A0A1Y2GU86
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.922
A0A1Y2GHR8
Phosphatidylinositol 3-kinase VPS34.
   
 0.799
A0A1Y2GUU8
Uncharacterized protein.
     
 0.715
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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