A0A1Y2GR35 protein (Lobosporangium transversale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2GR35

Uncharacterized protein. (226 aa)

Predicted Functional Partners:

A0A1Y2GLH4

0.878

A0A1Y2GZF0

0.877

A0A1Y2GKT6

0.853

A0A1Y2GWH2

0.847

A0A1Y2GTF5

0.801

A0A1Y2H0G0

0.787

A0A1Y2H1I0

0.787

A0A1Y2GLG3

0.755

A0A1Y2GXM4

0.755

A0A1Y2G9L5

0.736

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G9L5	A0A1Y2GKT6	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1Y2G9L5	A0A1Y2GLG3	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A1Y2G9L5	A0A1Y2GLH4	Uncharacterized protein.	SWIB domain-containing protein.	0.945
A0A1Y2G9L5	A0A1Y2GR35	Uncharacterized protein.	Uncharacterized protein.	0.736
A0A1Y2G9L5	A0A1Y2GTF5	Uncharacterized protein.	Uncharacterized protein.	0.909
A0A1Y2G9L5	A0A1Y2GWH2	Uncharacterized protein.	SWIB/MDM2 domain-containing protein.	0.880
A0A1Y2G9L5	A0A1Y2GXM4	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A1Y2G9L5	A0A1Y2GZF0	Uncharacterized protein.	Actin family; Belongs to the actin family.	0.945
A0A1Y2G9L5	A0A1Y2H0G0	Uncharacterized protein.	GATA-type domain-containing protein.	0.896
A0A1Y2G9L5	A0A1Y2H1I0	Uncharacterized protein.	GATA-type domain-containing protein.	0.896
A0A1Y2GKT6	A0A1Y2G9L5	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1Y2GKT6	A0A1Y2GLH4	Uncharacterized protein.	SWIB domain-containing protein.	0.936
A0A1Y2GKT6	A0A1Y2GR35	Uncharacterized protein.	Uncharacterized protein.	0.853
A0A1Y2GKT6	A0A1Y2GWH2	Uncharacterized protein.	SWIB/MDM2 domain-containing protein.	0.919
A0A1Y2GKT6	A0A1Y2GZF0	Uncharacterized protein.	Actin family; Belongs to the actin family.	0.931
A0A1Y2GKT6	A0A1Y2H0G0	Uncharacterized protein.	GATA-type domain-containing protein.	0.927
A0A1Y2GKT6	A0A1Y2H1I0	Uncharacterized protein.	GATA-type domain-containing protein.	0.927
A0A1Y2GLG3	A0A1Y2G9L5	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A1Y2GLG3	A0A1Y2GLH4	Uncharacterized protein.	SWIB domain-containing protein.	0.975
A0A1Y2GLG3	A0A1Y2GR35	Uncharacterized protein.	Uncharacterized protein.	0.755