STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GTR8Uncharacterized protein. (1023 aa)    
Predicted Functional Partners:
A0A1Y2GJU2
DNA_mis_repair domain-containing protein.
  
 
0.999
A0A1Y2GU67
DNA mismatch repair protein MSH2; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.993
A0A1Y2GG18
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.990
A0A1Y2GLD1
Muts domain V-domain-containing protein.
 
 0.975
A0A1Y2GW08
PIN domain-like protein.
   
 0.968
A0A1Y2H2K5
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.966
A0A1Y2GSD2
Uncharacterized protein.
  
 0.963
A0A1Y2GQ55
Putative DNA mismatch repair protein Msh4.
 
 0.962
A0A1Y2GXS2
DNA mismatch repair protein MutS.
 
 0.959
A0A1Y2GM85
Helicase C-terminal domain-domain-containing protein.
   
 0.943
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.