STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GUE3RNase P subunit p30-domain-containing protein. (280 aa)    
Predicted Functional Partners:
A0A1Y2G5M0
Ribonuclease P protein subunit.
   
 0.998
A0A1Y2GBQ6
NUC188 domain-domain-containing protein.
   
 0.998
A0A1Y2H3F5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
  
 0.998
A0A1Y2GRA1
DUF4477 domain-containing protein.
   
 0.997
A0A1Y2H2C9
Uncharacterized protein.
   
 0.993
A0A1Y2G671
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.981
A0A1Y2GQE0
S2 ribosomal protein; Belongs to the universal ribosomal protein uS5 family.
    
  0.981
A0A1Y2GRX1
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 
  0.980
A0A1Y2H6A1
Uncharacterized protein.
   
 0.979
A0A1Y2GZU7
Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.
   
 
  0.978
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.