STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GW54Uncharacterized protein. (933 aa)    
Predicted Functional Partners:
A0A1Y2G7K1
XPC-binding domain-domain-containing protein.
   
 0.999
A0A1Y2GB27
Uncharacterized protein.
    
 0.998
A0A1Y2GY02
Ubiquitin-related domain-containing protein.
     
 0.978
A0A1Y2GVU3
Uncharacterized protein.
    
 0.974
A0A1Y2G9Z9
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.964
A0A1Y2GC98
Helicase ATP-binding domain-containing protein.
    
 0.951
A0A1Y2GRH5
WD40-repeat-containing domain protein.
   
 0.940
A0A1Y2H290
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.929
A0A1Y2GRW3
TFIIH subunit Tfb4/p34.
    
 0.913
A0A1Y2GRI9
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.907
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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