STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2GWA7ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family. (397 aa)    
Predicted Functional Partners:
A0A1Y2GGJ4
RNP containing family member.
   
 0.980
A0A1Y2GVH2
Putative mago nashi protein.
   
 0.973
A0A1Y2G7L3
RRM domain-containing protein.
   
 0.971
A0A1Y2H296
Armadillo-type protein.
    
 0.963
A0A1Y2GGD8
Smg-4/UPF3 family-domain-containing protein.
   
 0.950
A0A1Y2H5S4
ATP-dependent RNA helicase uap56.
  
0.949
A0A1Y2GVZ9
Sas10/Utp3/C1D family-domain-containing protein.
   
 0.945
A0A1Y2G8D2
RRM domain-containing protein.
   
 0.936
A0A1Y2GDS0
Pre-mRNA-processing-splicing factor 8.
   
 0.936
A0A1Y2GMB5
RRM domain-containing protein.
   
 0.936
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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