A0A1Y2H094 protein (Lobosporangium transversale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2H094

Leucine-tRNA ligase. (1096 aa)

Predicted Functional Partners:

A0A1Y2GV58

0.995

A0A1Y2GW24

0.991

A0A1Y2GB67

0.989

A0A1Y2GEP1

0.989

A0A1Y2GN10

0.984

A0A1Y2GYH5

0.982

A0A1Y2GMB7

0.972

A0A1Y2GWP3

0.971

A0A1Y2G618

0.940

A0A1Y2G900

0.937

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G618	A0A1Y2G900	AA_TRNA_LIGASE_II domain-containing protein.	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.954
A0A1Y2G618	A0A1Y2GB67	AA_TRNA_LIGASE_II domain-containing protein.	Tyrosine--tRNA ligase.	0.956
A0A1Y2G618	A0A1Y2GEP1	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein.	0.956
A0A1Y2G618	A0A1Y2GMB7	AA_TRNA_LIGASE_II domain-containing protein.	tRNA synthetases class I, catalytic domain-domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.946
A0A1Y2G618	A0A1Y2GN10	AA_TRNA_LIGASE_II domain-containing protein.	tRNA synthetases class I (M)-domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.896
A0A1Y2G618	A0A1Y2GV58	AA_TRNA_LIGASE_II domain-containing protein.	Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.970
A0A1Y2G618	A0A1Y2GW24	AA_TRNA_LIGASE_II domain-containing protein.	tRNA synthetases class I, catalytic domain-domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.971
A0A1Y2G618	A0A1Y2GWP3	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.846
A0A1Y2G618	A0A1Y2GYH5	AA_TRNA_LIGASE_II domain-containing protein.	Prolyl-tRNA synthetase.	0.890
A0A1Y2G618	A0A1Y2H094	AA_TRNA_LIGASE_II domain-containing protein.	Leucine-tRNA ligase.	0.940
A0A1Y2G900	A0A1Y2G618	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.954
A0A1Y2G900	A0A1Y2GB67	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Tyrosine--tRNA ligase.	0.954
A0A1Y2G900	A0A1Y2GEP1	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-binding domain-containing protein.	0.954
A0A1Y2G900	A0A1Y2GMB7	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA synthetases class I, catalytic domain-domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.898
A0A1Y2G900	A0A1Y2GN10	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA synthetases class I (M)-domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.890
A0A1Y2G900	A0A1Y2GV58	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.909
A0A1Y2G900	A0A1Y2GW24	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA synthetases class I, catalytic domain-domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.896
A0A1Y2G900	A0A1Y2GWP3	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.843
A0A1Y2G900	A0A1Y2GYH5	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Prolyl-tRNA synthetase.	0.954
A0A1Y2G900	A0A1Y2H094	Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Leucine-tRNA ligase.	0.937