STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2H0M5Fanconi anaemia protein FANCD2. (1527 aa)    
Predicted Functional Partners:
A0A1Y2H1P1
FANCI solenoid 2-domain-containing protein.
  
 0.999
A0A1Y2GEV7
WD-repeat region-domain-containing protein.
  
 
 0.993
A0A1Y2GK04
Uncharacterized protein.
   
 0.991
A0A1Y2GL43
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.968
A0A1Y2H3W4
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.966
A0A1Y2GUL3
Nuclear transport factor 2.
   
 0.965
A0A1Y2GT68
Nuclear protein localization protein 4.
    
 0.947
A0A1Y2GPU0
WD_REPEATS_REGION domain-containing protein.
    
 0.932
A0A1Y2G9H7
Ribosomal protein S27a-domain-containing protein.
    
  0.918
A0A1Y2GGY1
Ribosomal protein S27a-domain-containing protein.
    
  0.918
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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