STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2H280Splicing factor subunit; Belongs to the SF3B5 family. (83 aa)    
Predicted Functional Partners:
A0A1Y2GC95
RRM domain-containing protein.
   
 0.999
A0A1Y2G4X7
PSP domain-containing protein.
    
 0.998
A0A1Y2GK81
CPSF A subunit region-domain-containing protein.
   
 0.998
A0A1Y2GLB0
Uncharacterized protein.
   
 0.998
A0A1Y2GX61
Armadillo-type protein.
    
 0.998
A0A1Y2GLE7
Uncharacterized protein.
    
 0.997
A0A1Y2GN27
Matrin-type domain-containing protein.
   
 0.997
A0A1Y2G6P1
Matrin-type domain-containing protein.
   
 0.996
A0A1Y2GBV2
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.996
A0A1Y2GPE6
U2 small nuclear ribonucleo protein A.
   
 0.995
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.