STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2H2B5BTB domain-containing protein. (925 aa)    
Predicted Functional Partners:
A0A1Y2GNR2
TFIIE alpha subunit-domain-containing protein.
   
 0.946
A0A1Y2GBU5
TAF domain-containing protein.
   
 0.943
A0A1Y2G740
TAFII55 protein conserved region-domain-containing protein.
    
 0.942
A0A1Y2G7F8
Uncharacterized protein.
    
 0.942
A0A1Y2GHJ5
Bromo domain-containing protein.
    
 0.942
A0A1Y2GM99
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.942
A0A1Y2GR84
Transcription initiation factor TFIID component TAF4 family-domain-containing protein.
    
 0.942
A0A1Y2GZ35
Transcription initiation factor TFIID subunit A-domain-containing protein.
    
 0.942
A0A1Y2GSY7
Transcription initiation factor IID, 31kD subunit-domain-containing protein.
    
 0.941
A0A1Y2GUC1
WD40-repeat-containing domain protein.
    
 0.941
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.