STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2H5W2Uncharacterized protein. (120 aa)    
Predicted Functional Partners:
A0A1Y2GUM1
Uncharacterized protein.
    
 0.882
A0A1Y2GTC4
Uncharacterized protein.
    
 0.673
A0A1Y2GK20
Uncharacterized protein.
    
 0.662
A0A1Y2GUX1
Uncharacterized protein.
   
  0.639
A0A1Y2GRX8
Kinase-like domain-containing protein.
    
 0.625
A0A1Y2GT44
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.618
A0A1Y2H311
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
  0.616
A0A1Y2GCT5
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.601
A0A1Y2H275
Putative mitogen-activated protein-binding protein-interacting protein.
    
  0.599
A0A1Y2GFM1
Ribosomal protein S2, flavodoxin-like domain-containing protein; Belongs to the universal ribosomal protein uS2 family.
   
  0.594
Your Current Organism:
Lobosporangium transversale
NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116
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