STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB99160.1FecR family protein; InterPro IPR006860; COGs: COG3712 Fe2+-dicitrate sensor membrane component; KEGG: nwi:Nwi_0657 FecR protein; SPTR: A1ZZ36 Putative anti-sigma factor; PFAM: FecR protein. (396 aa)    
Predicted Functional Partners:
SMB99162.1
RNA polymerase, sigma-24 subunit, ECF subfamily; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: aci:ACIAD1161 putative RNA polymerase sigma factor; SPTR: A5ZEQ0 Putative uncharacterized protein; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.849
SMB99158.1
TonB-dependent receptor; InterPro IPR012910:IPR000531; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; KEGG: rce:RC1_3332 TonB-dependent receptor, putative; SPTR: A1ZHY4 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.848
SMB92343.1
FecR family protein; InterPro IPR006860; COGs: COG3712 Fe2+-dicitrate sensor membrane component; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor; SPTR: A3I2T0 Putative anti sigma factor; PFAM: FecR protein.
  
  
 
0.690
SMB80147.1
FecR family protein; InterPro IPR006860; COGs: COG3712 Fe2+-dicitrate sensor membrane component; KEGG: sde:Sde_1443 putative transcriptional regulator, putative; SPTR: A5ZH57 Putative uncharacterized protein; PFAM: FecR protein.
  
  
 
0.688
SMB83869.1
RNA polymerase, sigma-24 subunit, ECF subfamily; InterPro IPR007627:IPR013249:IPR007630:IPR014284:IPR014327; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; KEGG: sml:Smlt3900 putative RNA polymerase ECF sigma factor; SPTR: A1ZW95 RNA polymerase ECF-type sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family.
 
   0.684
SMB83876.1
FecR family protein; InterPro IPR006860; KEGG: cja:CJA_1861 probable transmembrane sensor; SPTR: A1ZT47 Putative anti-sigma factor; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component.
  
  
 
0.682
SMB85465.1
KEGG: neu:NE0546 TonB-dependent receptor protein; SPTR: A3XL49 Ferrichrome-iron receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TIGRFAM: TonB-dependent siderophore receptor; InterPro IPR012910:IPR000531:IPR010105; COGs: COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.651
SMB97730.1
KEGG: hypothetical protein; SPTR: A3I001 Putative uncharacterized protein.
  
     0.633
SMB87230.1
TonB-dependent receptor plug; InterPro IPR000531:IPR012910; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; KEGG: mxa:MXAN_4746 TonB-dependent receptor; SPTR: A3XIS4 Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
  
     0.615
SMB97898.1
RagB/SusD domain protein; InterPro IPR012944; KEGG: mxa:MXAN_4747 putative lipoprotein; SPTR: A4BX47 Putative outer membrane protein, probably involved in nutrient binding; PFAM: RagB/SusD domain protein.
  
     0.611
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.