STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB99166.1Phosphoesterase PA-phosphatase related; InterPro IPR000326; KEGG: bba:Bd2432 hypothetical protein; SPTR: A4AVC3 Putative uncharacterized protein; SMART: phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related. (170 aa)    
Predicted Functional Partners:
SMB91757.1
Cytochrome P450; InterPro IPR001128:IPR002401:IPR002403; COGs: COG2124 Cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein; SPTR: A1ZZK3 Cytochrome P450 4A10; PFAM: cytochrome P450.
    
  0.776
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.756
SMB97745.1
AMP-dependent synthetase and ligase; InterPro IPR000873; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: reh:H16_A1519 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; SPTR: A4LCG1 AMP-binding domain protein; PFAM: AMP-dependent synthetase and ligase.
    
  0.730
SMB97966.1
InterPro IPR000873; KEGG: dps:DP0250 O-succinylbenzoic acid-CoA ligase (MenE); SPTR: A1ZXX2 O-succinylbenzoic acid--CoA ligase; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.730
mraY
Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
  
  0.686
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
 
 0.653
SMB86519.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
 0.639
SMB99168.1
InterPro IPR001260; COGs: COG0408 Coproporphyrinogen III oxidase; KEGG: mxa:MXAN_6762 coproporphyrinogen III oxidase; SPTR: A1ZCB3 Coproporphyrinogen III oxidase, aerobic; PFAM: coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase.
       0.555
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
     0.551
lspA
Signal peptidase II. Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
  
  0.543
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.