STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsPPFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16; InterPro IPR000307; COGs: COG0228 Ribosomal protein S16; KEGG: pzu:PHZ_c0116 ribosomal protein S16; SPTR: A3HW21 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (180 aa)    
Predicted Functional Partners:
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
 0.999
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.999
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
   
 0.999
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.999
rpmA
LSU ribosomal protein L27P; InterPro IPR001684; KEGG: azc:AZC_4093 50S ribosomal protein L27; SPTR: Q11XX3 50S ribosomal protein L27; PFAM: ribosomal protein L27; COGs: COG0211 Ribosomal protein L27; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
 
 
 0.999
rpmF
LSU ribosomal protein L32P; InterPro IPR002677; KEGG: apj:APJL_1404 50S ribosomal protein L32; SPTR: A5FM90 50S ribosomal protein L32; PFAM: ribosomal L32p protein; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.999
rpmB
InterPro IPR001383; COGs: COG0227 Ribosomal protein L28; KEGG: xfn:XfasM23_0481 ribosomal protein L28; SPTR: A3HYB9 50S ribosomal protein L28; PFAM: ribosomal protein L28; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.999
rpsB
SSU ribosomal protein S2P; InterPro IPR001865:IPR005706; COGs: COG0052 Ribosomal protein S2; KEGG: gur:Gura_3733 30S ribosomal protein S2; SPTR: A3HWY0 30S ribosomal protein S2; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
 0.999
rpsI
SSU ribosomal protein S9P; InterPro IPR000754; COGs: COG0103 Ribosomal protein S9; KEGG: rru:Rru_A2151 30S ribosomal protein S9; SPTR: A3HWX9 30S ribosomal protein S9; PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 0.999
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 
 0.999
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.