STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB97390.1Protein of unknown function DUF255; InterPro IPR004879; COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: bsu:BSU40820 hypothetical protein; SPTR: A1ZCM1 Thymidylate kinase; PFAM: protein of unknown function DUF255. (679 aa)    
Predicted Functional Partners:
SMB98266.1
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; KEGG: cja:CJA_2760 cellulase, putative, cel5G; SPTR: A4C1X9 Probable glycosyl hydrolase; InterPro IPR005084:IPR001547:IPR006584; SMART: cellulose binding type IV; PFAM: glycoside hydrolase family 5; Carbohydrate binding family 6; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
  0.897
SMB97394.1
GSCFA domain protein; InterPro IPR014982; KEGG: GM22415 gene product from transcript GM22415-RA; SPTR: A1ZWT2 Lipoprotein, putative; PFAM: GSCFA domain protein.
   
   0.714
SMB98775.1
Putative esterase; InterPro IPR000801; COGs: COG2382 Enterochelin esterase; KEGG: bar:GBAA2721 hypothetical protein; SPTR: A2TWJ5 Putative uncharacterized protein; PFAM: putative esterase.
    
   0.556
SMB87079.1
Endo-1,4-beta-xylanase; InterPro IPR001000; COGs: COG3693 Beta-1 4-xylanase; KEGG: scl:sce6693 O-glycosyl hydrolase; SPTR: P14768 Endo-1,4-beta-xylanase A; SMART: glycoside hydrolase family 10; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase.
    
   0.527
SMB95988.1
Capsular exopolysaccharide family; InterPro IPR003856:IPR005702; COGs: COG0489 ATPase involved in chromosome partitioning; KEGG: sun:SUN_1559 capsular polysaccharide biosynthesis protein; SPTR: A1ZKR2 Chain length determinant protein; PFAM: lipopolysaccharide biosynthesis protein; PRIAM: Non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family.
    
  0.499
SMB92816.1
Capsular exopolysaccharide family; InterPro IPR005702; COGs: COG0489 ATPase involved in chromosome partitioning; KEGG: sun:SUN_1559 capsular polysaccharide biosynthesis protein; SPTR: A3I1Y5 Putative EPS related membrane protein; PRIAM: Non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family.
    
  0.499
SMC00618.1
Capsular exopolysaccharide family; InterPro IPR003856:IPR005702; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; KEGG: sun:SUN_1559 capsular polysaccharide biosynthesis protein; SPTR: A5ZCW3 Putative uncharacterized protein; PFAM: lipopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family.
    
  0.499
priA
Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
       0.491
SMB99151.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; InterPro IPR003362:IPR017475; KEGG: nmu:Nmul_A2673 undecaprenyl-phosphate galactosephosphotransferase; SPTR: Q2NHK8 Predicted bacterial sugar transferase; PFAM: sugar transferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
  0.471
SMB89268.1
Sugar transferase; InterPro IPR003362; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; KEGG: xfn:XfasM23_1480 undecaprenyl-phosphate glucose phosphotransferase; PFAM: sugar transferase; SPTR: A1ZI79 Capsular polysaccharide biosynthesis protein.
    
  0.471
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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