STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB90942.1Mandelate racemase/muconate lactonizing protein; InterPro IPR013342; COGs: COG4948 L-alanine-DL-glutamate epimerase; KEGG: bxe:Bxe_C1041 putative mandelate racemase/muconate lactonizing family protein; SPTR: Q3IRB2 Mandelate racemase homolog / muconate lactonizing enzyme homolog; PFAM: Mandelate racemase/muconate lactonizing protein. (342 aa)    
Predicted Functional Partners:
SMB98119.1
Mandelate racemase/muconate lactonizing protein; InterPro IPR013342:IPR001354; COGs: COG4948 L-alanine-DL-glutamate epimerase; KEGG: dps:DP0251 N-acylamino acid racemase (MenC); SPTR: A1ZMA5 Chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein.
  
  
  0.515
SMB90939.1
Sodium:dicarboxylate symporter; InterPro IPR001991; COGs: COG1301 Na+/H+-dicarboxylate symporter; KEGG: aba:Acid345_2088 sodium--dicarboxylate symporter; SPTR: A1HSF9 Sodium:dicarboxylate symporter; PFAM: sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
    
  0.494
SMB97966.1
InterPro IPR000873; KEGG: dps:DP0250 O-succinylbenzoic acid-CoA ligase (MenE); SPTR: A1ZXX2 O-succinylbenzoic acid--CoA ligase; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
 
  0.471
SMB94082.1
Mandelate racemase/muconate lactonizing protein; InterPro IPR013342:IPR013341; COGs: COG4948 L-alanine-DL-glutamate epimerase; KEGG: bsu:BSU12980 hypothetical protein; SPTR: A3I4A2 Mandelate racemase/muconate lactonizing enzyme family protein; PFAM: Mandelate racemase/muconate lactonizing protein.
  
  
 
0.456
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.