STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB91165.1Beta-lactamase domain protein; InterPro IPR001279:IPR001763:IPR001307; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sus:Acid_7272 beta-lactamase domain-containing protein; SPTR: A3XIX1 Rhodanese-like protein; SMART: Rhodanese domain protein; PFAM: beta-lactamase domain protein. (458 aa)    
Predicted Functional Partners:
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.997
rpsQ
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.991
SMB97417.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; InterPro IPR001450; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; KEGG: mxa:MXAN_5557 putative iron-sulfur binding oxidoreductase; SPTR: A1ZL71 Molybdopterin oxidoreductase, iron-sulfur binding subunit.
    
 0.906
SMB87402.1
Beta-lactamase domain protein; InterPro IPR001279; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: ppd:Ppro_0089 beta-lactamase domain-containing protein; SPTR: A3I369 Metallo-beta-lactamase family protein; PFAM: beta-lactamase domain protein.
  
 
0.906
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.893
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.879
SMB86008.1
InterPro IPR006163; KEGG: hypothetical protein; SPTR: A3JIG1 Acyl carrier protein.
   
 
 0.879
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
   
   0.869
SMB95093.1
Chalcone and stilbene synthase domain protein; InterPro IPR012328:IPR013747:IPR001099; COGs: COG3424 naringenin-chalcone synthase; KEGG: pin:Ping_0256 naringenin-chalcone synthase; SPTR: A1ZN71 Naringenin-chalcone synthase; PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein.
    
   0.869
SMB97938.1
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; InterPro IPR006139:IPR006140; COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; KEGG: pen:PSEEN1358 D-lactate dehydrogenase, NAD-dependent; SPTR: A3XKE7 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region.
  
 0.867
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.