STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB91312.1PhoH family protein; InterPro IPR003714; KEGG: pat:Patl_2207 PhoH-like protein; SPTR: A1ZUW6 Phosphate starvation-inducible protein, PhoH; PFAM: PhoH family protein; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase. (361 aa)    
Predicted Functional Partners:
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.890
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.801
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
 
     0.665
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
    0.569
SMB91303.1
Protein of unknown function DUF62; InterPro IPR002747; COGs: COG1912 conserved hypothetical protein; KEGG: dal:Dalk_3152 protein of unknown function DUF62; SPTR: A3HYH1 Putative uncharacterized protein; PFAM: protein of unknown function DUF62.
       0.568
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.543
SMB91321.1
GCN5-related N-acetyltransferase; InterPro IPR000182; COGs: COG2153 acyltransferase; KEGG: rme:Rmet_1833 GCN5-related N-acetyltransferase; SPTR: A3HYH3 Acetyltransferase; PFAM: GCN5-related N-acetyltransferase.
       0.487
SMC00281.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.476
SMB86951.1
Ribonuclease, Rne/Rng family; InterPro IPR003029:IPR004659; COGs: COG1530 Ribonuclease G and E; KEGG: gbm:Gbem_0159 ribonuclease, Rne/Rng family; SPTR: A3HUX1 Putative ribonuclease E; SMART: RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; PRIAM: Ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family.
 
    0.473
cmk
Cytidylate kinase; InterPro IPR011994:IPR003136; COGs: COG0283 Cytidylate kinase; KEGG: baa:BA_2039 cytidylate kinase; SPTR: A1ZH12 Cytidylate kinase; PFAM: cytidylate kinase region; TIGRFAM: cytidylate kinase.
  
    0.433
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.