STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB83846.1Alpha amylase catalytic region; InterPro IPR006047:IPR006589; COGs: COG0366 Glycosidase; KEGG: ppr:PBPRB0415 putative glycosidase; SPTR: A5ZCR8 Putative uncharacterized protein; SMART: alpha amylase catalytic sub domain; PFAM: alpha amylase catalytic region. (647 aa)    
Predicted Functional Partners:
SMB92302.1
Alpha-glucosidase; KEGG: sfr:Sfri_1777 alpha-glucosidase; SPTR: A3J2I6 Putative alpha-glucosidase.
  
  0.833
SMB83841.1
Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198:IPR013968; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; KEGG: scl:sce8810 short chain dehydrogenase/reductase family oxidoreductase; SPTR: Q6GDV6 Uncharacterized oxidoreductase SAR2567; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.723
SMB83847.1
Hypothetical protein.
       0.682
SMB83817.1
Alpha amylase catalytic region; InterPro IPR015171:IPR006047:IPR006589; COGs: COG0366 Glycosidase; KEGG: cja:CJA_0735 alpha-amylase, putative, amy13E; SPTR: A1ZWA8 Neopullulanase; SMART: alpha amylase catalytic sub domain; PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; Belongs to the glycosyl hydrolase 13 family.
 
     0.666
SMB91172.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3); InterPro IPR004841; COGs: COG0531 Amino acid transporter; KEGG: sus:Acid_4944 amino acid permease-associated region; SPTR: A4LTS6 Amino acid permease; PFAM: amino acid permease-associated region.
    
  0.624
SMB83688.1
InterPro IPR004841; COGs: COG0531 Amino acid transporter; KEGG: sus:Acid_4783 amino acid permease-associated region; SPTR: Q9N1Q4 Large neutral amino acids transporter small subunit 2; PFAM: amino acid permease-associated region.
    
  0.624
SMC00327.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3); InterPro IPR004841; COGs: COG0531 Amino acid transporter; KEGG: aba:Acid345_3285 amino acid transporter; SPTR: B6M4Y4 Putative uncharacterized protein; PFAM: amino acid permease-associated region.
    
  0.624
SMB94341.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3); InterPro IPR004841; COGs: COG0531 Amino acid transporter; KEGG: sus:Acid_4914 amino acid permease-associated region; SPTR: A3CWK2 Amino acid permease-associated region; PFAM: amino acid permease-associated region.
    
  0.624
SMB96645.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3); InterPro IPR004841; COGs: COG0531 Amino acid transporter; KEGG: dps:DP2116 hypothetical protein; SPTR: A3J658 Putative uncharacterized protein; PFAM: amino acid permease-associated region.
    
  0.624
SMB81848.1
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3); InterPro IPR004841; COGs: COG0531 Amino acid transporter; KEGG: bid:Bind_1663 amino acid permease-associated region; SPTR: A2U7L0 Amino acid permease-associated region; PFAM: amino acid permease-associated region.
    
  0.624
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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