STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB89098.1Permease YjgP/YjgQ family protein; InterPro IPR005495; COGs: COG0795 permease; KEGG: sat:SYN_00415 permease; SPTR: A1ZXQ6 Putative permease, YjgP/YjgQ family; PFAM: permease YjgP/YjgQ family protein. (358 aa)    
Predicted Functional Partners:
SMB82374.1
ABC transporter related; InterPro IPR003439:IPR003593; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; KEGG: hip:CGSHiEE_06305 ABC transporter ATP-binding protein; SPTR: A3HVP4 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.994
SMB99885.1
Permease YjgP/YjgQ family protein; InterPro IPR005495; COGs: COG0795 permease; KEGG: aba:Acid345_1515 transporter, YjgP/YjgQ family; SPTR: A1ZP03 Putative permease, YjgP/YjgQ family; PFAM: permease YjgP/YjgQ family protein.
 
 
 
0.902
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
 
  
 0.871
SMB86530.1
Beta-barrel assembly machine subunit BamA; InterPro IPR000184:IPR010827:IPR016474; COGs: COG4775 Outer membrane protein/protective antigen OMA87; KEGG: gme:Gmet_2357 surface antigen (D15); SPTR: A1ZP33 Bacterial surface antigen family protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.741
SMB99851.1
Outer membrane transport energization protein ExbB (TC 2.C.1.1.1); SPTR: A3HTF2 Putative biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; InterPro IPR002898; COGs: COG0811 Biopolymer transport protein; KEGG: hha:Hhal_1248 MotA/TolQ/ExbB proton channel.
  
     0.658
SMB97654.1
Signal peptidase I; InterPro IPR000223:IPR011056; COGs: COG0681 Signal peptidase I; KEGG: pca:Pcar_1617 signal peptidase I; SPTR: A3HZF4 Signal peptidase I; PFAM: peptidase S24 and S26 domain protein; TIGRFAM: signal peptidase I; Belongs to the peptidase S26 family.
 
     0.638
SMB86547.1
KEGG: afw:Anae109_1121 outer membrane chaperone Skp (OmpH); SPTR: A3HY37 Outer membrane protein (OmpH-like); PFAM: outer membrane chaperone Skp (OmpH); InterPro IPR005632.
  
     0.629
SMB96776.1
KEGG: gsu:GSU1489 hypothetical protein; SPTR: A1ZGE8 Conserved.
  
     0.618
SMB87981.1
KEGG: gsu:GSU1489 hypothetical protein; SPTR: A1ZG62 Conserved.
  
     0.615
SMB91499.1
Cell division protein FtsQ; KEGG: hypothetical protein; SPTR: A1ZIZ0 Putative uncharacterized protein.
  
     0.602
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.