STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB98253.1Excinuclease ABC C subunit domain protein; InterPro IPR000305; COGs: COG2827 endonuclease containing a URI domain; KEGG: aca:ACP_0799 putative excinuclease ABC; SPTR: A1ZTH3 Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC C subunit domain protein; PFAM: Excinuclease ABC C subunit domain protein. (93 aa)    
Predicted Functional Partners:
SMB98255.1
23S rRNA m(5)U-1939 methyltransferase; InterPro IPR010280:IPR002792:IPR001566; COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; KEGG: dat:HRM2_26600 TrmA; SPTR: A3I0Q4 Putative RNA methyltransferase; PFAM: (Uracil-5)-methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
    0.568
SMB98251.1
Hypothetical protein; SPTR: A3I0Q5 Putative uncharacterized protein.
       0.566
SMC00358.1
Protein of unknown function DUF559; InterPro IPR007569; COGs: COG2852 conserved hypothetical protein; KEGG: mca:MCA0550 DNA methyltransferase; SPTR: A3J2B0 Methionine synthase I; PFAM: protein of unknown function DUF559.
  
     0.566
SMC00279.1
Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
 
  
 0.500
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.