STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB87972.1LVIVD repeat protein; InterPro IPR013211; KEGG: dal:Dalk_1645 LVIVD repeat protein; SPTR: A4CJB8 Putative uncharacterized protein; PFAM: LVIVD repeat protein. (457 aa)    
Predicted Functional Partners:
SMB87971.1
Hypothetical protein.
       0.773
SMB84939.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.682
SMC00151.1
Hypothetical protein; SPTR: A1ZC35 Putative uncharacterized protein.
  
  
  0.553
SMB99081.1
KEGG: hypothetical protein; SPTR: A3HS69 Phosphoesterase, PA-phosphatase related protein.
  
  
  0.480
SMB87976.1
Glutamyl peptidase. Serine peptidase. MEROPS family S09D; PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; InterPro IPR000383:IPR001375; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: ccs:CCNA_02753 aminoacyl peptidase; SPTR: A3HUN9 Putative uncharacterized protein.
       0.465
SMB87968.1
Polyphosphate:AMP phosphotransferase; InterPro IPR005660; COGs: COG2326 conserved hypothetical protein; KEGG: mno:Mnod_5853 protein of unknown function DUF344; SPTR: A3ER89 Uncharacterized conserved protein; PFAM: protein of unknown function DUF344.
       0.460
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.