STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB88327.1Succinylglutamate desuccinylase/aspartoacylase; InterPro IPR007036; COGs: COG3608 deacylase; KEGG: abo:ABO_0729 deacylase, putative; SPTR: A4ANX3 Succinylglutamate desuccinylase/aspartoacylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase. (340 aa)    
Predicted Functional Partners:
SMB88325.1
SSU ribosomal protein S6P modification protein; InterPro IPR003806:IPR004218:IPR013651:IPR011761:IPR004666; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); KEGG: vfm:VFMJ11_0676 ribosomal protein S6 modification protein; SPTR: A3HYF4 Ribosomal protein S6 modification protein; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; glutathione synthetase ATP-binding; protein of unknown function DUF201; Belongs to the RimK family.
     0.888
SMB88319.1
Protein of unknown function DUF785; InterPro IPR008503; COGs: COG4067 conserved hypothetical protein; KEGG: abu:Abu_2189 hypothetical protein; SPTR: A2TR19 Putative uncharacterized protein; PFAM: protein of unknown function DUF785.
 
     0.862
SMB88331.1
InterPro IPR005632; KEGG: geo:Geob_0744 outer membrane chaperone Skp (OmpH); SPTR: A3U691 Putative uncharacterized protein; PFAM: outer membrane chaperone Skp (OmpH).
       0.488
SMB94638.1
Aminopeptidase P. Metallo peptidase. MEROPS family M24B; InterPro IPR007865:IPR000994:IPR001131; COGs: COG0006 Xaa-Pro aminopeptidase; KEGG: pmy:Pmen_0325 peptidase M24; SPTR: A2U2G4 Metallopeptidase family M24; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; Belongs to the peptidase M24B family.
    
 0.427
SMB96943.1
Peptidase M24; InterPro IPR007865:IPR000994:IPR001131; COGs: COG0006 Xaa-Pro aminopeptidase; KEGG: hypothetical protein; SPTR: A3HWY2 Probable X-pro aminopeptidase; PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein.
    
 0.427
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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