STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC00551.1Hypothetical protein; SPTR: A1ZKZ4 Putative uncharacterized protein. (313 aa)    
Predicted Functional Partners:
SMC00550.1
YceI family protein; InterPro IPR007372; KEGG: sit:TM1040_1049 cytochrome b561; SPTR: A1ZKZ5 Putative uncharacterized protein; PFAM: YceI family protein; Belongs to the UPF0312 family.
 
     0.936
SMC00552.1
Hypothetical protein; InterPro IPR009056; KEGG: mgm:Mmc1_0336 conserved hypothetical protein-transmembrane region and signal peptide prediction; SPTR: A1ZHR5 Putative uncharacterized protein.
       0.793
SMC00553.1
Rieske [2Fe-2S] domain protein; InterPro IPR005805:IPR005806; COGs: COG0723 Rieske Fe-S protein; KEGG: mxa:MXAN_6572 iron-sulfur cluster-binding protein, Rieske family; SPTR: A0YYP2 Rieske (2Fe-2S) region protein; PFAM: Rieske [2Fe-2S] domain protein.
       0.574
SMC00032.1
OmpA/MotB domain protein; InterPro IPR006664:IPR011659:IPR006665:IPR013026; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; KEGG: hypothetical protein; K03640 peptidoglycan-associated lipoprotein; SPTR: A3HZL6 Peptidoglycan associated periplasmic protein; PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller.
  
 
 
 0.520
SMB86540.1
InterPro IPR005632; COGs: COG2825 Outer membrane protein; KEGG: gur:Gura_3236 outer membrane chaperone Skp (OmpH); SPTR: A3HY36 Cationic outer membrane protein OmpH; PFAM: outer membrane chaperone Skp (OmpH).
  
 
   0.490
SMB96177.1
O-antigen polymerase; InterPro IPR007016; KEGG: tdn:Suden_1699 O-antigen polymerase; SPTR: A2TQU4 Putative uncharacterized protein; PFAM: O-antigen polymerase.
  
     0.489
SMB96615.1
InterPro IPR006665:IPR000297; COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; KEGG: mgm:Mmc1_2327 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: A1ZI74 Putative exported isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; OmpA/MotB domain protein.
  
 
 
 0.471
SMB93201.1
O-antigen polymerase; InterPro IPR007016; KEGG: sus:Acid_6617 O-antigen polymerase; SPTR: A3ERX2 O antigen polymerase; PFAM: O-antigen polymerase.
  
     0.457
SMB98965.1
InterPro IPR013026; KEGG: hypothetical protein; SPTR: Q55BT0 Putative uncharacterized protein.
  
     0.417
SMB82128.1
OmpA/MotB domain protein; InterPro IPR001035:IPR006664:IPR006665:IPR011659:IPR013026; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; KEGG: hypothetical protein; K03640 peptidoglycan-associated lipoprotein; SPTR: A3HXW3 OmpA family protein; PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller.
    
 
 0.416
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.