STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC00568.1Glycoside hydrolase family 43; InterPro IPR006710; KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor; SPTR: A3XLS3 Endo-1,4-beta-xylanase D; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family. (292 aa)    
Predicted Functional Partners:
SMB98845.1
Protein of unknown function DUF1680; InterPro IPR012878; COGs: COG3533 conserved hypothetical protein; KEGG: sbp:Sbal223_2153 protein of unknown function DUF1680; SPTR: A3XLT5 Putative uncharacterized protein; PFAM: protein of unknown function DUF1680.
     0.917
SMB98862.1
acetyl-CoA carboxylase, biotin carboxylase; COGs: COG3533 conserved hypothetical protein; SPTR: A3XLT5 Putative uncharacterized protein; KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase.
     0.916
SMB87234.1
Alpha-N-arabinofuranosidase; InterPro IPR006710; COGs: COG3940 beta-xylosidase; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; SPTR: A3XKZ4 Putative lipoprotein; PFAM: glycoside hydrolase family 43; PRIAM: Alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.835
SMC00570.1
Hypothetical protein; KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase; SPTR: A3XLS2 Putative uncharacterized protein.
 
     0.765
SMB98635.1
Hypothetical protein; KEGG: sde:Sde_3094 GntR family transcriptional regulator; SPTR: A5ZFT4 Putative uncharacterized protein.
 
 
 0.759
SMB98863.1
KEGG: shn:Shewana3_2080 acetyl-CoA carboxylase, biotin carboxylase; SPTR: A3XLT5 Putative uncharacterized protein.
 
     0.754
SMB87079.1
Endo-1,4-beta-xylanase; InterPro IPR001000; COGs: COG3693 Beta-1 4-xylanase; KEGG: scl:sce6693 O-glycosyl hydrolase; SPTR: P14768 Endo-1,4-beta-xylanase A; SMART: glycoside hydrolase family 10; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase.
  
 0.738
SMC00561.1
KEGG: sus:Acid_2992 alpha-N-arabinofuranosidase; SPTR: A3XLT4 Alpha-L-arabinofuranosidase A.
 
 
  0.726
SMB84606.1
alpha-L-arabinosidase; COGs: COG3534 Alpha-L-arabinofuranosidase; KEGG: bha:BH1874 alpha-L-arabinosidase; SPTR: A4CJN1 Alpha-L-arabinosidase.
 
 
  0.695
SMB87174.1
Alpha-N-arabinofuranosidase; InterPro IPR006710; COGs: COG3940 beta-xylosidase; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; SPTR: A3XKZ4 Putative lipoprotein; PFAM: glycoside hydrolase family 43; PRIAM: Alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.671
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.