STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB87174.1Alpha-N-arabinofuranosidase; InterPro IPR006710; COGs: COG3940 beta-xylosidase; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; SPTR: A3XKZ4 Putative lipoprotein; PFAM: glycoside hydrolase family 43; PRIAM: Alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (349 aa)    
Predicted Functional Partners:
SMB87178.1
KEGG: hypothetical protein; SPTR: A3XKZ3 Putative uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.952
SMC00570.1
Hypothetical protein; KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase; SPTR: A3XLS2 Putative uncharacterized protein.
 
   
 0.708
SMB80723.1
COGs: COG4289 conserved hypothetical protein; KEGG: sus:Acid_3172 hypothetical protein; SPTR: A3I0Y1 Putative uncharacterized protein.
  
     0.675
SMC00568.1
Glycoside hydrolase family 43; InterPro IPR006710; KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor; SPTR: A3XLS3 Endo-1,4-beta-xylanase D; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.671
SMB87172.1
Glycoside hydrolase family 43; InterPro IPR006710:IPR006311; COGs: COG3940 beta-xylosidase; KEGG: hypothetical protein; SPTR: A3HUZ5 Putative beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
0.644
SMB84606.1
alpha-L-arabinosidase; COGs: COG3534 Alpha-L-arabinofuranosidase; KEGG: bha:BH1874 alpha-L-arabinosidase; SPTR: A4CJN1 Alpha-L-arabinosidase.
 
   
 0.641
SMC00561.1
KEGG: sus:Acid_2992 alpha-N-arabinofuranosidase; SPTR: A3XLT4 Alpha-L-arabinofuranosidase A.
 
   
 0.640
SMB98845.1
Protein of unknown function DUF1680; InterPro IPR012878; COGs: COG3533 conserved hypothetical protein; KEGG: sbp:Sbal223_2153 protein of unknown function DUF1680; SPTR: A3XLT5 Putative uncharacterized protein; PFAM: protein of unknown function DUF1680.
 
     0.622
SMC00562.1
PFAM: alpha-L-arabinofuranosidase domain protein; InterPro IPR010720; COGs: COG3534 Alpha-L-arabinofuranosidase; KEGG: Os11g0131900; hypothetical protein; SPTR: A3XLT4 Alpha-L-arabinofuranosidase A.
 
   
 0.577
SMB84192.1
Glycoside hydrolase family 43; InterPro IPR006710; COGs: COG3507 Beta-xylosidase; KEGG: mxa:MXAN_5247 glycosyl hydrolase, family 43; SPTR: A3HV08 Beta-xylosidase (1,4-beta-D-xylan xylosidase); PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.544
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.