STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB97767.1Protein of unknown function DUF885; InterPro IPR010281; COGs: COG4805 conserved hypothetical protein; KEGG: xcv:XCV1450 putative secreted protein; SPTR: A2TVN2 Putative lipoprotein, counterparts found in phytopathogens; PFAM: protein of unknown function DUF885. (604 aa)    
Predicted Functional Partners:
SMB97765.1
PAS/PAC sensor signal transduction histidine kinase; InterProIPR004358:IPR013655:IPR013767:IPR003594:IPR 013656:IPR003661:IPR001610:IPR000014:IPR000700:IPR005467; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); KEGG: pna:Pnap_0091 PAS/PAC sensor hybrid histidine kinase; SPTR: A0YP26 Sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS [...]
       0.468
SMB97770.1
KEGG: mxa:MXAN_0238 hypothetical protein.
       0.420
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.