STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC00250.1ABC transporter related; InterPro IPR003439:IPR003593:IPR017871; COGs: COG1131 ABC-type multidrug transport system ATPase component; KEGG: ABC transporter; SPTR: A1ZM12 ABC transporter, ATP-binding protein; SMART: AAA ATPase; PFAM: ABC transporter related. (210 aa)    
Predicted Functional Partners:
SMB87412.1
Cytochrome c-type biogenesis protein CcmB; InterPro IPR003544; KEGG: mxa:MXAN_3257 heme exporter protein CcmB; SPTR: A1ZLX8 CcmB protein; PFAM: cytochrome c-type biogenesis protein CcmB.
 
 0.991
SMB87417.1
Cytochrome c assembly protein; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; KEGG: dvl:Dvul_1946 cytochrome c assembly protein; SPTR: A3HVJ4 Heme exporter protein C, putative; InterPro IPR003557:IPR002541; PFAM: cytochrome c assembly protein.
 
 0.978
SMB87425.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.844
SMC00249.1
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.793
SMC00251.1
Protein of unknown function DUF820; InterPro IPR008538; COGs: COG4636 conserved hypothetical protein; KEGG: scl:sce5025 hypothetical protein; SPTR: A0ZMA0 Putative uncharacterized protein; PFAM: protein of unknown function DUF820.
       0.697
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
     0.657
SMB86775.1
Hypothetical protein; SPTR: A3I1K4 Putative uncharacterized protein.
  
     0.652
SMB87844.1
Hypothetical protein; InterPro IPR017871; SPTR: A1ZSS8 Putative outer membrane protein, probably involved in nutrient binding.
  
     0.637
SMB92531.1
ABC transporter related; InterPro IPR003439:IPR003593:IPR017871; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; KEGG: ara:Arad_7107 ABC transporter; SPTR: A2BIY1 ABC-type, ATP binding, spermidine/spermine transporter, PotA; SMART: AAA ATPase; PFAM: ABC transporter related.
  
     0.636
SMB87423.1
Hypothetical protein; SPTR: A1ZW52 Putative uncharacterized protein.
  
     0.618
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.