STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SMC00297.1Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (422 aa)    
Predicted Functional Partners:
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
 0.997
kdsB
3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
  
 0.973
SMB90113.1
InterPro IPR004960; COGs: COG1560 Lauroyl/myristoyl acyltransferase; KEGG: sat:SYN_00133 lipid A biosynthesis lauroyl acyltransferase; SPTR: A1ZST5 Acyltransferase, HtrB/MsbB family; PFAM: lipid A biosynthesis acyltransferase.
 
  
 0.967
SMB96941.1
Glycosyl transferase family 9; InterPro IPR002201; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; KEGG: lip:LI0698 ADP-heptose:LPS heptosyltransferase II; SPTR: A1ZMY2 Lipopolysaccharide heptosyltransferase II, putative; PFAM: glycosyl transferase family 9.
 
  
 0.922
SMB92874.1
Glycosyl transferase family 39; InterPro IPR003342; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: gsu:GSU2555 melittin resistance protein, putative; SPTR: A3XKL8 Melittin resistance protein, putative; PFAM: glycosyl transferase family 39.
  
  
  0.886
SMB96168.1
Glycosyl transferase family 9; InterPro IPR002201; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; KEGG: reu:Reut_A2559 glycosyl transferase family protein; SPTR: A1ZR65 Glycosyl transferase, family 9; PFAM: glycosyl transferase family 9.
 
  
 0.883
SMB97858.1
Glycosyl transferase family 9; InterPro IPR002201; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; KEGG: gme:Gmet_2881 ADP-heptose:LPS heptosyltransferase-like; SPTR: A3EV59 ADP-heptose; PFAM: glycosyl transferase family 9.
 
  
 0.878
SMB96177.1
O-antigen polymerase; InterPro IPR007016; KEGG: tdn:Suden_1699 O-antigen polymerase; SPTR: A2TQU4 Putative uncharacterized protein; PFAM: O-antigen polymerase.
    
 0.850
SMB96344.1
O-antigen polymerase; InterPro IPR007016; KEGG: sun:SUN_1947 hypothetical protein; PFAM: O-antigen polymerase.
    
 0.850
SMB96757.1
KpsF/GutQ family protein; InterPro IPR001347:IPR000644:IPR004800; COGs: COG0794 sugar phosphate isomerase involved in capsule formation; KEGG: mgm:Mmc1_3339 KpsF/GutQ family protein; SPTR: A3I1D9 Carbohydrate isomerase, KpsF/GutQ family protein; SMART: CBS domain containing protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.
 
   
 0.844
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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