STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB95069.1Intracellular protease, PfpI family; InterPro IPR002818:IPR006286; COGs: COG0693 Putative intracellular protease/amidase; KEGG: bra:BRADO3949 putative intracellular proteinase; SPTR: A3VHF2 Putative intracellular protease, PfpI family protein; PFAM: ThiJ/PfpI domain protein; TIGRFAM: intracellular protease, PfpI family. (189 aa)    
Predicted Functional Partners:
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
   0.860
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.820
SMB86279.1
Catalase; InterPro IPR002226:IPR011614:IPR010582; COGs: COG0753 Catalase; KEGG: bha:BH1306 catalase; SPTR: Q59337 Catalase; PFAM: Catalase domain protein; PRIAM: Catalase; Belongs to the catalase family.
  
 0.757
SMB96846.1
InterPro IPR001424; COGs: COG2032 Cu/Zn superoxide dismutase; KEGG: dia:Dtpsy_1880 superoxide dismutase copper/zinc binding; SPTR: A3UAG3 Superoxide dismutase [Cu-Zn]; PFAM: superoxide dismutase copper/zinc binding.
   
 
 0.751
SMB98429.1
Histone deacetylase; InterPro IPR000286; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; KEGG: prw:PsycPRwf_2162 histone deacetylase superfamily protein; SPTR: A1ZPR4 Histone deacetylase superfamily; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase.
    
  0.750
SMB95082.1
Histone deacetylase; InterPro IPR000286; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; KEGG: prw:PsycPRwf_2162 histone deacetylase superfamily protein; SPTR: A1ZPR4 Histone deacetylase superfamily; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase.
    
  0.750
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
   
   0.626
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
   0.625
SMB91165.1
Beta-lactamase domain protein; InterPro IPR001279:IPR001763:IPR001307; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sus:Acid_7272 beta-lactamase domain-containing protein; SPTR: A3XIX1 Rhodanese-like protein; SMART: Rhodanese domain protein; PFAM: beta-lactamase domain protein.
   
 0.609
SMC00296.1
InterPro IPR000866:IPR013740; COGs: COG0450 Peroxiredoxin; KEGG: mgm:Mmc1_1679 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: A3HY26 Putative thioredoxin peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein.
   
 
 0.605
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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