STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB82807.1Alkylhydroperoxidase like protein, AhpD family; InterPro IPR003779:IPR004675; COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; KEGG: xom:XOO_3460 hypothetical protein; SPTR: A3HUJ1 Putative uncharacterized protein; PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase like protein, AhpD family. (125 aa)    
Predicted Functional Partners:
SMB82786.1
Exodeoxyribonuclease III Xth; InterPro IPR005135:IPR000097:IPR004808; COGs: COG0708 Exonuclease III; KEGG: bsu:BSU40880 multifunctional DNA-repair enzyme; SPTR: A5ZDC5 Putative uncharacterized protein; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III.
       0.793
SMB82805.1
Hypothetical protein; SPTR: A3HUJ0 Putative uncharacterized protein.
       0.793
SMB82822.1
Phosphoribosyltransferase; InterPro IPR000836:IPR002345; COGs: COG1040 amidophosphoribosyltransferase; KEGG: geo:Geob_0615 amidophosphoribosyltransferase-like protein; SPTR: A1ZWT9 Competence protein; PFAM: phosphoribosyltransferase.
       0.544
SMB82778.1
COGs: COG0419 ATPase involved in DNA repair; KEGG: hypothetical protein; SPTR: A1ZZU8 Putative uncharacterized protein.
       0.535
SMB97860.1
Adenylosuccinate lyase; InterPro IPR000362:IPR013539:IPR004769; COGs: COG0015 Adenylosuccinate lyase; KEGG: adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase; SPTR: A2TPH0 Adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain protein; fumarate lyase; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.510
icmF
Methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.508
SMB82760.1
InterPro IPR003594; COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); KEGG: aba:Acid345_2515 putative anti-sigma regulatory factor, serine/threonine protein kinase; SPTR: A1ZZU9 Putative uncharacterized protein; PFAM: ATP-binding region ATPase domain protein.
  
    0.494
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.491
SMB97555.1
3-oxoacid CoA-transferase, B subunit; InterPro IPR004165:IPR004164:IPR012791; KEGG: pae:PA2000 putative CoA transferase, subunit B; SPTR: A1ZCH9 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; PFAM: coenzyme A transferase; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; PRIAM: 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit.
  
 
 0.480
SMB97568.1
3-oxoacid CoA-transferase, A subunit; InterPro IPR004165:IPR004163:IPR012792; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; KEGG: bba:Bd2096 3-oxoacid CoA-transferase subunit A; SPTR: A4CHV5 3-oxoacid CoA-transferase subunit A; PFAM: coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit.
  
 
 0.453
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.