STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB97989.1Homospermidine synthase (spermidine-specific); InterPro IPR002773; COGs: COG1899 Deoxyhypusine synthase; KEGG: bba:Bd2349 hypothetical protein; SPTR: A3HSF7 Deoxyhypusine synthase family protein; PFAM: deoxyhypusine synthase. (323 aa)    
Predicted Functional Partners:
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
   
 0.989
SMB97873.1
Orn/DAP/Arg decarboxylase 2; InterPro IPR000183; COGs: COG0019 Diaminopimelate decarboxylase; KEGG: abu:Abu_0964 arginine decarboxylase; SPTR: A3HTP7 Putative arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2.
 
     0.671
hslV
ATP dependent peptidase CodWX, CodW component. Threonine peptidase. MEROPS family T01B; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.507
SMB97987.1
Hypothetical protein.
       0.507
SMC00383.1
Arginase/agmatinase/formiminoglutamase; InterPro IPR005924:IPR006035; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; KEGG: ank:AnaeK_1264 arginase/agmatinase/formiminoglutamase; SPTR: A3J293 Arginase/agmatinase/formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
   
 0.494
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
   0.445
SMB97426.1
Quinol:cytochrome c oxidoreductase membrane protein; KEGG: mxa:MXAN_5555 hypothetical protein; SPTR: A3HZ85 Putative uncharacterized protein.
 
     0.414
SMB97413.1
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; InterPro IPR002322:IPR003088:IPR009056:IPR011031; KEGG: mxa:MXAN_5558 putative cytochrome c; SPTR: A1ZL70 Cytochrome c3; PFAM: cytochrome c class I.
 
     0.402
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.