STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB94176.1Patatin; InterPro IPR002641; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; KEGG: pag:PLES_17251 hypothetical protein; SPTR: A5ZCG6 Putative uncharacterized protein; PFAM: Patatin. (773 aa)    
Predicted Functional Partners:
SMB94158.1
Pentapeptide repeat protein; InterPro IPR001646; COGs: COG1357 Uncharacterized low-complexity protein; KEGG: dps:DP0533 MCBG protein (microcin resistance protein); SPTR: A1ZFK8 Antibiotic resistance protein McbG; PFAM: pentapeptide repeat protein.
     
 0.682
SMB99854.1
TPR repeat-containing protein; InterPro IPR001440:IPR011716:IPR013105:IPR013026; KEGG: hypothetical protein; SPTR: A1ZQ73 Tetratricopeptide repeat family; SMART: Tetratricopeptide domain protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein.
  
 
 0.673
SMB80169.1
PKD domain containing protein; InterPro IPR000601; KEGG: shw:Sputw3181_3947 peptidase M6, immune inhibitor A; SPTR: A2UXU7 Peptidase M6, immune inhibitor A; SMART: PKD domain containing protein; PFAM: PKD domain containing protein.
  
 
 0.604
SMB95699.1
KEGG: scl:sce5067 hypothetical protein; SPTR: A1ZZW8 LipL48.
  
 
 0.593
SMB89795.1
Beta-barrel assembly machine subunit BamD; InterPro IPR017689; COGs: COG4105 DNA uptake lipoprotein; KEGG: erw:ERWE_CDS_08200 hypothetical protein; SPTR: A1ZPL7 Putative uncharacterized protein; TIGRFAM: outer membrane assembly lipoprotein YfiO.
   
 
 0.548
SMB91828.1
Beta-barrel assembly machine subunit BamE; KEGG: ppg:PputGB1_2823 SmpA/OmlA domain-containing protein.
    
 
 0.542
SMB96615.1
InterPro IPR006665:IPR000297; COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; KEGG: mgm:Mmc1_2327 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: A1ZI74 Putative exported isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; OmpA/MotB domain protein.
  
 
 0.540
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
  
 0.526
SMB94184.1
Protein of unknown function DUF486; InterPro IPR007437; COGs: COG3169 conserved hypothetical protein; KEGG: cha:CHAB381_1230 transmembrane signal peptide protein; SPTR: A5ZGK3 Putative uncharacterized protein; PFAM: protein of unknown function DUF486.
       0.523
SMB94195.1
KEGG: bba:Bd0441 hypothetical protein; SPTR: A1ZDL8 Putative uncharacterized protein.
       0.519
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.