STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB86530.1Beta-barrel assembly machine subunit BamA; InterPro IPR000184:IPR010827:IPR016474; COGs: COG4775 Outer membrane protein/protective antigen OMA87; KEGG: gme:Gmet_2357 surface antigen (D15); SPTR: A1ZP33 Bacterial surface antigen family protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein. (837 aa)    
Predicted Functional Partners:
SMB86519.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
    0.959
SMB86540.1
InterPro IPR005632; COGs: COG2825 Outer membrane protein; KEGG: gur:Gura_3236 outer membrane chaperone Skp (OmpH); SPTR: A3HY36 Cationic outer membrane protein OmpH; PFAM: outer membrane chaperone Skp (OmpH).
 
    0.924
SMB89795.1
Beta-barrel assembly machine subunit BamD; InterPro IPR017689; COGs: COG4105 DNA uptake lipoprotein; KEGG: erw:ERWE_CDS_08200 hypothetical protein; SPTR: A1ZPL7 Putative uncharacterized protein; TIGRFAM: outer membrane assembly lipoprotein YfiO.
  
 
 0.891
SMB86547.1
KEGG: afw:Anae109_1121 outer membrane chaperone Skp (OmpH); SPTR: A3HY37 Outer membrane protein (OmpH-like); PFAM: outer membrane chaperone Skp (OmpH); InterPro IPR005632.
 
    0.858
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.804
SMB87981.1
KEGG: gsu:GSU1489 hypothetical protein; SPTR: A1ZG62 Conserved.
  
     0.765
SMB96776.1
KEGG: gsu:GSU1489 hypothetical protein; SPTR: A1ZGE8 Conserved.
  
     0.765
SMB97654.1
Signal peptidase I; InterPro IPR000223:IPR011056; COGs: COG0681 Signal peptidase I; KEGG: pca:Pcar_1617 signal peptidase I; SPTR: A3HZF4 Signal peptidase I; PFAM: peptidase S24 and S26 domain protein; TIGRFAM: signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.759
SMB89098.1
Permease YjgP/YjgQ family protein; InterPro IPR005495; COGs: COG0795 permease; KEGG: sat:SYN_00415 permease; SPTR: A1ZXQ6 Putative permease, YjgP/YjgQ family; PFAM: permease YjgP/YjgQ family protein.
  
     0.741
SMB93761.1
KEGG: hypothetical protein; SPTR: A3HWW5 Putative uncharacterized protein.
  
     0.741
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.